Thanks Wnhough.

I was not able to reply to your answer, so I am opening a new thread.

I stay in Texas where there is no state taxes.
However I work in a state where there are taxes.

For estimated taxes, I have paid my federal taxes and state taxes for that state where I work.
Should I not be paying my estimated State taxes, since I live and my S-Corp is based in Texas ?

I have already worked for 4 months this year on LLC without generating my payroll, if I use quickbooks now to generate my pay checks retrospectively, am I in trouble with the IRS ?
Thanks